HL_11BQ_081

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11BQ_081 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.1916

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

11BQ|1|a|U|2324
11BQ|1|a|G|2325
11BQ|1|a|C|2326
11BQ|1|a|A|2327
11BQ|1|a|A|2328
11BQ|1|a|U|2329
11BQ|1|a|G|2330
11BQ|1|a|G|2331

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5

Chain v

50S ribosomal protein L27