HL_11DG_015
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11DG_015 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.1396
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
11DG|1|A|C|689
11DG|1|A|G|690
11DG|1|A|G|691
11DG|1|A|U|692
11DG|1|A|G|693
11DG|1|A|A|694
11DG|1|A|A|695
11DG|1|A|A|696
11DG|1|A|U|697
11DG|1|A|G|698
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain K
- Small ribosomal subunit protein uS11
- Chain U
- Small ribosomal subunit protein bS21
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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