HL_11DG_033
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11DG_033 not in the Motif Atlas
- Geometric match to HL_8B0X_034
- Geometric discrepancy: 0.2122
- The information below is about HL_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_65821.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
11DG|1|a|U|87
11DG|1|a|G|88
11DG|1|a|A|89
11DG|1|a|U|90
11DG|1|a|A|91
11DG|1|a|U|92
11DG|1|a|G|93
11DG|1|a|A|94
11DG|1|a|A|95
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
- Chain t
- 50S ribosomal protein L24
- Chain x
- Large ribosomal subunit protein uL29
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