HL_11DG_042

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

11DG|1|a|G|329, 11DG|1|a|A|330, 11DG|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_042 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3868

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

11DG|1|a|G|327
11DG|1|a|U|328
11DG|1|a|G|329
11DG|1|a|A|330
11DG|1|a|C|331
11DG|1|a|A|332
11DG|1|a|G|333
11DG|1|a|C|334
11DG|1|a|C|335

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24