HL_11DG_064

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

11DG|1|a|A|1453, 11DG|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_064 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.1386

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

11DG|1|a|C|1451
11DG|1|a|G|1452
11DG|1|a|A|1453
11DG|1|a|C|1454
11DG|1|a|G|1455
11DG|1|a|G|1456
11DG|1|a|U|1457
11DG|1|a|U|1458
11DG|1|a|G|1459

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17