HL_11DG_068

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

11DG|1|a|A|1614, 11DG|1|a|A|1616, 11DG|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_068 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1365

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

11DG|1|a|C|1612
11DG|1|a|G|1613
11DG|1|a|A|1614
11DG|1|a|C|1615
11DG|1|a|A|1616
11DG|1|a|C|1617
11DG|1|a|6MZ|1618
11DG|1|a|G|1619

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain r

Large ribosomal subunit protein uL22