HL_11DG_074

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

11DG|1|a|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_074 not in the Motif Atlas

Geometric match to HL_8B0X_074

Geometric discrepancy: 0.1068

The information below is about HL_8B0X_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

11DG|1|a|C|1806
11DG|1|a|G|1807
11DG|1|a|A|1808
11DG|1|a|A|1809
11DG|1|a|A|1810
11DG|1|a|G|1811

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28