HL_8B0X_074

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

8B0X|1|a|A|1810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B0X_074 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.1275

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8B0X|1|a|C|1808
8B0X|1|a|G|1809
8B0X|1|a|A|1810
8B0X|1|a|A|1811
8B0X|1|a|A|1812
8B0X|1|a|G|1813

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28