HL_11DG_076

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

11DG|1|a|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_076 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1906

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11DG|1|a|G|1910
11DG|1|a|PSU|1911
11DG|1|a|A|1912
11DG|1|a|A|1913
11DG|1|a|C|1914
11DG|1|a|3TD|1915
11DG|1|a|A|1916
11DG|1|a|PSU|1917
11DG|1|a|A|1918
11DG|1|a|A|1919
11DG|1|a|C|1920

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA