Motif HL_82185.4 Version HL_82185.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8B0X_076 | 8B0X | 0.4015 | 1 | a | LSU rRNA | G | 1914 | PSU | 1915 | A | 1916 | C | 1918 | 3TD | 1919 | A | 1920 | PSU | 1921 | A | 1922 | A | 1923 | C | 1924 | cWW | tHW | cSH | |
| 2 | HL_8GLP_053 | 8GLP | 0.3829 | 1 | L5 | LSU rRNA | G | 3757 | PSU | 3758 | A | 3759 | C | 3761 | PSU | 3762 | A | 3763 | PSU | 3764 | G | 3765 | A | 3766 | C | 3767 | cWW | ntSH | tHW | |
| 3 | HL_9SUM_044 | 9SUM | 0.1264 | 1 | A | LSU rRNA | G | 2168 | U | 2169 | A | 2170 | C | 2172 | U | 2173 | A | 2174 | U | 2175 | G | 2176 | A | 2177 | C | 2178 | cWW | ntSH | tHW | |
| 4 | HL_8OI5_044 | 8OI5 | 0.1122 | 1 | 1 | LSU rRNA | G | 2231 | U | 2232 | A | 2233 | C | 2235 | U | 2236 | A | 2237 | U | 2238 | G | 2239 | A | 2240 | C | 2241 | cWW | tHW | ||
| 5 | HL_9H3G_052 | 9H3G | 0.0000 | 1 | A | LSU rRNA | G | 2251 | PSU | 2252 | A | 2253 | C | 2255 | PSU | 2256 | A | 2257 | PSU | 2258 | G | 2259 | A | 2260 | C | 2261 | cWW | ntSH | tHW | |
| 6 | HL_9DFE_046 | 9DFE | 0.1049 | 1 | 1A | LSU rRNA | G | 1910 | PSU | 1911 | A | 1912 | C | 1914 | 5MU | 1915 | A | 1916 | PSU | 1917 | A | 1918 | A | 1919 | OMC | 1920 | cWW | tHW | ncSH | |
| 7 | HL_9PN5_047 | 9PN5 | 0.1669 | 1 | A1 | LSU rRNA | G | 2253 | U | 2254 | A | 2255 | C | 2257 | PSU | 2258 | A | 2259 | PSU | 2260 | G | 2261 | A | 2262 | C | 2263 | cWW | tHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACUAUGAC | 2 |
| GAACAAAC | 1 |
| GACAGAC | 1 |
| G(PSU)A(A2M)C(PSU)A(PSU)GAC | 1 |
| G(PSU)AAC(5MU)A(PSU)AA(OMC) | 1 |
| GUAAC(PSU)A(PSU)GAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (PSU)A(A2M)C(PSU)A(PSU)GA | 2 |
| UAACUAUGA | 2 |
| (PSU)AAC(3TD)A(PSU)AA | 1 |
| (PSU)AAC(5MU)A(PSU)AA | 1 |
| UAAC(PSU)A(PSU)GA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.24 | Max 0.52
Coloring options: