HL_11EL_063

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

11EL|1|a|A|1453, 11EL|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11EL_063 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0601

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

11EL|1|a|C|1451
11EL|1|a|G|1452
11EL|1|a|A|1453
11EL|1|a|C|1454
11EL|1|a|G|1455
11EL|1|a|G|1456
11EL|1|a|U|1457
11EL|1|a|U|1458
11EL|1|a|G|1459

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17