HL_11EL_067

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

11EL|1|a|A|1614, 11EL|1|a|A|1616, 11EL|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11EL_067 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1199

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

11EL|1|a|C|1612
11EL|1|a|G|1613
11EL|1|a|A|1614
11EL|1|a|C|1615
11EL|1|a|A|1616
11EL|1|a|C|1617
11EL|1|a|6MZ|1618
11EL|1|a|G|1619

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain r

Large ribosomal subunit protein uL22