HL_11EL_077

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

11EL|1|a|6MZ|2030, 11EL|1|a|A|2031, 11EL|1|a|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11EL_077 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2074

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

11EL|1|a|G|2027
11EL|1|a|U|2028
11EL|1|a|G|2029
11EL|1|a|6MZ|2030
11EL|1|a|A|2031
11EL|1|a|G|2032
11EL|1|a|A|2033
11EL|1|a|U|2034
11EL|1|a|G|2035
11EL|1|a|C|2036

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain q

Large ribosomal subunit protein bL21

Chain z

50S ribosomal protein L32