Motif HL_78372.4 Version HL_78372.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DFE_048 | 9DFE | 0.3382 | 3 | 1A | LSU rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH |
| 2 | HL_7A0S_049 | 7A0S | 0.3692 | 3 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | U | 2017 | G | 2018 | C | 2019 | cWW | tWH |
| 3 | HL_4V9F_052 | 4V9F | 0.3279 | 3 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | G | 2075 | U | 2076 | C | 2077 | cWW | tWH |
| 4 | HL_8B0X_078 | 8B0X | 0.3100 | 3 | a | LSU rRNA | G | 2031 | U | 2032 | G | 2033 | A | 2037 | U | 2038 | G | 2039 | C | 2040 | cWW | tWH |
| 5 | HL_4WF9_047 | 4WF9 | 0.3354 | 3 | X | LSU rRNA | G | 2054 | U | 2055 | G | 2056 | A | 2060 | U | 2061 | G | 2062 | C | 2063 | cWW | tWH |
| 6 | HL_9E6Q_049 | 9E6Q | 0.2566 | 3 | 1 | LSU rRNA | G | 2147 | U | 2148 | G | 2149 | A | 2153 | G | 2154 | OMU | 2155 | C | 2156 | cWW | tWH |
| 7 | HL_9AXU_047 | 9AXU | 0.0571 | 3 | 2 | LSU rRNA | G | 2457 | G | 2458 | G | 2459 | G | 2463 | G | 2464 | G | 2465 | C | 2466 | cWW | tWH |
| 8 | HL_9SUM_046 | 9SUM | 0.0000 | 3 | A | LSU rRNA | G | 2284 | G | 2285 | G | 2286 | G | 2290 | G | 2291 | G | 2292 | C | 2293 | cWW | tWH |
| 9 | HL_9H3G_054 | 9H3G | 0.0489 | 3 | A | LSU rRNA | G | 2367 | G | 2368 | G | 2369 | G | 2373 | G | 2374 | G | 2375 | C | 2376 | cWW | tWH |
| 10 | HL_8GLP_055 | 8GLP | 0.0432 | 3 | L5 | LSU rRNA | G | 3873 | G | 3874 | G | 3875 | G | 3879 | G | 3880 | G | 3881 | C | 3882 | cWW | tWH |
| 11 | HL_8OI5_046 | 8OI5 | 0.0480 | 3 | 1 | LSU rRNA | G | 2347 | G | 2348 | G | 2349 | G | 2353 | G | 2354 | G | 2355 | C | 2356 | cWW | tWH |
| 12 | HL_9PN5_049 | 9PN5 | 0.0493 | 3 | A1 | LSU rRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAACGGGC | 6 |
| GUGAAGAUGC | 2 |
| GUAAAGAUGC | 1 |
| GUGCGGAGUC | 1 |
| GUGAGAUGC | 1 |
| GUGCACAG(OMU)C | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAACGGG | 6 |
| UGAAGAUG | 2 |
| UAAAGAUG | 1 |
| UGCGGAGU | 1 |
| UG(6MZ)AGAUG | 1 |
| UGCACAG(OMU) | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (12)
- Basepair signature
- cWW-tWH-F-F-F
- Heat map statistics
- Min 0.03 | Avg 0.21 | Max 0.39
Coloring options: