HL_11FV_025

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

11FV|1|C|G|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_025 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2637

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

11FV|1|C|G|1083
11FV|1|C|U|1084
11FV|1|C|U|1085
11FV|1|C|A|1086
11FV|1|C|A|1087
11FV|1|C|G|1088
11FV|1|C|U|1089
11FV|1|C|C|1090

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS21

Chain D

Small ribosomal subunit protein uS2

Chain n

Small ribosomal subunit protein uS7