#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 71-72-63-5
1 HL_6GSK_2046GSK0.68082T-loop1K tRNAG535MU54PSU55G57A58U60C61ncWWntWH
2 HL_1QTQ_0021QTQ0.54792tRNA anticodon loopB tRNAA931U932U933U935A937U938U939cWWtSH
3 HL_4JXZ_0024JXZ0.55722tRNA anticodon loopBRNA (71-MER)U931U932U933U935A937U938A939cWWntSH
4 HL_4JYZ_0024JYZ0.56232tRNA anticodon loopB tRNAU931OMU932U933U9352MA937PSU938A939cWWntSH
5 HL_2D6F_0052D6F0.63082tRNA anticodon loopFtRNAG931C932U933G936G937A938C939cWWcWW
6 HL_3IVK_0053IVK0.54221T-loop relatedMclass I ligase productG92U93U94A95A96A98C99cWWntSH
7 HL_6CZR_0966CZR0.21401T-loop related1a SSU rRNAG1072U1073U1074A1075A1076U1078C1079cWWcwW
8 HL_4LFB_0254LFB0.15881T-loop relatedA SSU rRNAG1089U1090U1091A1092A1093U1095C1096cWWcwW
9 HL_5J7L_0245J7L0.17671T-loop relatedAA SSU rRNAG1089U1090U1091A1092A1093U1095C1096cWWcwW
10 HL_8CRE_0088CRE0.202231 LSU rRNAU278U279U280G281G282U286G287cWWcwW
11 HL_8P9A_1208P9A0.18943T-loop relatedAR LSU rRNAU278U279U280G281G282U286G287cWWcwW
12 HL_3R4F_0013R4F0.22621T-loop relatedApRNAA24U25U26G27A28U30U31cWWcwW
13 HL_8P9A_1368P9A0.15541T-loop relatedAR LSU rRNAC1076U1077U1078A1079A1080U1082G1083cWWcwW
14 HL_8CRE_0238CRE0.144811 LSU rRNAC1072U1073U1074A1075A1076U1078G1079cWWcwW
15 HL_8P9A_2188P9A0.13261T-loop relatedsR SSU rRNAC1309U1310U1311A1312A1313U1315G1316cWWcwW
16 HL_8CRE_2198CRE0.00001T-loop related (H)CM SSU rRNAC1294U1295U1296A1297A1298U1300G1301cWWcwW
17 HL_7TZS_0027TZS0.45241T-loop relatedXTPP riboswitch (THI element)G66A67U68A69A70U71C73cWW
18 HL_3K0J_0023K0J0.44651T-loop relatedERNA (87-MER)G66A67U68A69A70U71C73cWW
19 HL_3D2V_0023D2V0.45261T-loop relatedATPP riboswitch (THI element)G54G55U56A57A58U59C61cWW
20 HL_4V9F_0394V9F0.49930Other HL0 LSU rRNAC1594G1595U1596A1597A1598U1599G1600cWW
21 HL_8P9A_1958P9A0.48471T-loop with 1 bulged basesR SSU rRNAG243A244U245G246A247U248C250cWW
22 HL_8CRE_1968CRE0.47801T-loop with 1 bulged base (H)CM SSU rRNAG241A242U243G244A245U246C248cWW
23 HL_5CCB_0035CCB0.68502T-loop relatedN tRNAG53U54U55C56A58||AG59C61cWW
24 HL_4WF9_0194WF90.57652Other HLX LSU rRNAC654A655G656U657A659U661G662cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUAAUUG4
GUUAAGUC3
UUUGGGAAUG2
GAUAAUGC2
GAUGAUUC2
G(5MU)(PSU)CGACUC1
AUUCUGAUU1
UUUUUGAUA1
UUUGA1
GCUUUGGAC1
GUUAAAAC1
AUUGAGUU1
GGUAAUGC1
CGUAAUG1
GUUCAAGUC1
CAGUAAAUG1
Non-Watson-Crick part of the motif
SequenceCounts
UUAAUU4
UUAAGU3
UUGGGAAU2
AUAAUG2
AUGAUU2
(5MU)(PSU)CGACU1
UUCUGAU1
UUUUGAU1
(OMU)U(1RN)UG(2MA)(PSU)1
CUUUGGA1
UUAAAA1
UUGAGU1
GUAAUG1
GUAAU1
UUCAAGU1
AGUAAAU1

Release history

Release3.95
Date2025-03-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • T-loop related (12)
  • tRNA anticodon loop (4)
  • Other HL (2)
  • (2)
  • T-loop (1)
  • T-loop with 1 bulged base (H) (1)
  • T-loop related (H) (1)
  • T-loop with 1 bulged base (1)
  • Basepair signature
    cWW-F-F-F-F-F
    Heat map statistics
    Min 0.07 | Avg 0.51 | Max 0.94
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