HL_11FV_043

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

11FV|1|I|G|329, 11FV|1|I|A|330, 11FV|1|I|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_043 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3807

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

11FV|1|I|G|327
11FV|1|I|U|328
11FV|1|I|G|329
11FV|1|I|A|330
11FV|1|I|C|331
11FV|1|I|A|332
11FV|1|I|G|333
11FV|1|I|C|334
11FV|1|I|C|335

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain c

50S ribosomal protein L24