HL_11FV_059

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

11FV|1|I|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_059 not in the Motif Atlas

Homologous match to HL_1MMS_003

Geometric discrepancy: 0.4958

The information below is about HL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11FV|1|I|C|1064
11FV|1|I|U|1065
11FV|1|I|U|1066
11FV|1|I|A|1067
11FV|1|I|G|1068
11FV|1|I|A|1069
11FV|1|I|A|1070
11FV|1|I|G|1071
11FV|1|I|C|1072
11FV|1|I|A|1073
11FV|1|I|G|1074

Current chains

Chain I

23S ribosomal RNA

Nearby chains