HL_11FV_060

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_060 not in the Motif Atlas

Homologous match to HL_7A0S_029

Geometric discrepancy: 0.5589

The information below is about HL_7A0S_029

Detailed Annotation

GNRA related

Broad Annotation

T-loop

Motif group

HL_38635.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

11FV|1|I|C|1092
11FV|1|I|G|1093
11FV|1|I|U|1094
11FV|1|I|A|1095
11FV|1|I|A|1096
11FV|1|I|U|1097
11FV|1|I|A|1098
11FV|1|I|G|1099

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain m

Large ribosomal subunit protein bL36A