Motif HL_28253.2 Version HL_28253.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-5 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6GYV_003 | 6GYV | 0.8432 | 1 | A | Lariat-capping ribozyme | G | 103 | G | 104 | C | 106 | G | 107 | A | 108 | U | 109 | C | 110 | cWW | |||||
| 2 | HL_7A0S_029 | 7A0S | 0.9604 | 1 | GNRA related | X | LSU rRNA | C | 1103 | G | 1104 | U | 1105 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | ntSH | |||
| 3 | HL_9E6Q_047 | 9E6Q | 0.8221 | 1 | GNRA related (H) | 1 | LSU rRNA | G | 1996 | G | 1997 | U | 1998 | C | 2000 | A | 2001 | A | 2002 | C | 2003 | cWW | ||||
| 4 | HL_4V9F_049 | 4V9F | 0.8502 | 1 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH | |||
| 5 | HL_2D6F_005 | 2D6F | 0.8143 | 2 | tRNA anticodon loop | F | tRNA | G | 931 | C | 932 | U | 933 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW | |||
| 6 | HL_4WZD_250 | 4WZD | 0.6778 | 0 | 3L | tRNA | U | 47||||P_1 | C | 48||||P_1 | A | 49||||P_1 | U | 50||||P_1 | C | 51||||P_1 | G | 52||||P_1 | A | 53||||P_1 | cWW | ncSW | ||||
| 7 | HL_9H3G_038 | 9H3G | 0.5054 | 0 | A | LSU rRNA | G | 1571 | C | 1572 | U | 1573 | U | 1574 | A | 1575 | A | 1576 | C | 1577 | cWW | cWW | ||||
| 8 | HL_6CF2_001 | 6CF2 | 0.2291 | 1 | G | RNA (35-MER) | A | 13 | C | 14 | U | 15 | C | 17 | G | 18 | G | 19 | U | 20 | cWW | |||||
| 9 | HL_9SUM_018 | 9SUM | 0.1943 | 1 | A | LSU rRNA | C | 674 | U | 675 | C | 676 | C | 678 | G | 679 | G | 680 | G | 681 | cWW | tSW | ||||
| 10 | HL_8OI5_020 | 8OI5 | 0.0635 | 2 | 1 | LSU rRNA | G | 906 | C | 907 | G | 908 | A | 910 | A | 911 | A | 913 | C | 914 | cWW | cWW | tSW | |||
| 11 | HL_9PN5_021 | 9PN5 | 0.0480 | 2 | A1 | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW | |||
| 12 | HL_9SUM_022 | 9SUM | 0.0471 | 2 | A | LSU rRNA | G | 853 | C | 854 | G | 855 | A | 857 | A | 858 | A | 860 | C | 861 | cWW | cWW | tSW | |||
| 13 | HL_9AXU_019 | 9AXU | 0.0410 | 2 | 2 | LSU rRNA | G | 942 | C | 943 | G | 944 | A | 946 | A | 947 | A | 949 | C | 950 | cWW | cWW | tSW | |||
| 14 | HL_9H3G_027 | 9H3G | 0.0311 | 2 | A | LSU rRNA | G | 919 | C | 920 | G | 921 | A | 923 | A | 924 | A | 926 | C | 927 | cWW | cWW | tSW | |||
| 15 | HL_8GLP_024 | 8GLP | 0.0000 | 2 | L5 | LSU rRNA | G | 1627 | C | 1628 | G | 1629 | A | 1631 | A | 1632 | A | 1634 | C | 1635 | cWW | cWW | tSW | |||
| 16 | HL_9E6Q_025 | 9E6Q | 0.0762 | 2 | 1 | LSU rRNA | G | 896 | C | 897 | A | 898 | A | 900 | A | 901 | A | 903 | C | 904 | cWW | cWW | tSW | |||
| 17 | HL_5H9F_001 | 5H9F | 0.4468 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW | ncWw |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 6 |
| GGACGAUC | 1 |
| CGUAAUAG | 1 |
| GGUACAAC | 1 |
| CGUACAAG | 1 |
| GCUUUGGAC | 1 |
| UCAUCGA | 1 |
| GCUUAAC | 1 |
| ACUUCGGU | 1 |
| CUCUCGGG | 1 |
| GCAAAA(OMG)AC | 1 |
| GCGCCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 6 |
| GUACAA | 2 |
| GACGAU | 1 |
| GUAAUA | 1 |
| CUUUGGA | 1 |
| CAUCG | 1 |
| CUUAA | 1 |
| CUUCGG | 1 |
| UCUCGG | 1 |
| CAAAA(OMG)A | 1 |
| CGCCAG | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- GNRA related (2)
- tRNA anticodon loop (1)
- GNRA related (H) (1)
- Basepair signature
- cWW-cWW-F-F-F
- Heat map statistics
- Min 0.03 | Avg 0.54 | Max 0.97
Coloring options: