HL_11FV_071

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

11FV|1|I|A|1614, 11FV|1|I|A|1616, 11FV|1|I|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_071 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.129

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

11FV|1|I|C|1612
11FV|1|I|G|1613
11FV|1|I|A|1614
11FV|1|I|C|1615
11FV|1|I|A|1616
11FV|1|I|C|1617
11FV|1|I|6MZ|1618
11FV|1|I|G|1619

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein uL22

Chain k

Large ribosomal subunit protein bL34