HL_11FV_085

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

11FV|1|I|A|2268, 11FV|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_085 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1405

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

11FV|1|I|C|2264
11FV|1|I|U|2265
11FV|1|I|A|2266
11FV|1|I|A|2267
11FV|1|I|A|2268
11FV|1|I|G|2269
11FV|1|I|A|2270
11FV|1|I|G|2271
11FV|1|I|U|2272
11FV|1|I|A|2273
11FV|1|I|A|2274
11FV|1|I|C|2275
11FV|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL16

Chain e

50S ribosomal protein L27