HL_11FV_089

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

11FV|1|I|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_089 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1892

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

11FV|1|I|U|2404
11FV|1|I|G|2405
11FV|1|I|A|2406
11FV|1|I|A|2407
11FV|1|I|U|2408
11FV|1|I|G|2409
11FV|1|I|G|2410
11FV|1|I|A|2411
11FV|1|I|A|2412
11FV|1|I|G|2413

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15