HL_11FV_090

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

11FV|1|I|C|2475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_090 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.4426

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

11FV|1|I|A|2471
11FV|1|I|G|2472
11FV|1|I|U|2473
11FV|1|I|U|2474
11FV|1|I|C|2475
11FV|1|I|A|2476
11FV|1|I|U|2477
11FV|1|I|A|2478
11FV|1|I|U|2479

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain m

Large ribosomal subunit protein bL36A