HL_11GG_004

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUGAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_004 not in the Motif Atlas

Geometric match to HL_3AM1_002

Geometric discrepancy: 0.3887

The information below is about HL_3AM1_002

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

11GG|1|C|C|180
11GG|1|C|U|181
11GG|1|C|G|182
11GG|1|C|A|183
11GG|1|C|G|184
11GG|1|C|G|185

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS20