11GG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_11GG_001 | 1/C/12:22 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_11GG_003 | 1/C/152:157 | GNRA | homologous HL_6CZR_074 NA | |
| HL_11GG_004 | 1/C/180:185 | GNRA variation | geometric HL_3AM1_002 HL_34789.5 | |
| HL_11GG_006 | 1/C/253:261 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_11GG_007 | 1/C/290:295 | GNRA | homologous HL_6CZR_078 NA | |
| HL_11GG_008 | 1/C/314:327 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_11GG_009 | 1/C/336:341 | UNCG | homologous HL_6CZR_080 NA | |
| HL_11GG_010 | 1/C/373:378 | GNRA | homologous HL_6CZR_081 NA | |
| HL_11GG_011 | 1/C/413:418 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_11GG_013 | 1/C/516:521 | GNRA variation | homologous HL_6CZR_216 NA | |
| HL_11GG_014 | 1/C/611:617 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_11GG_015 | 1/C/683:692 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_11GG_016 | 1/C/720:725 | GNRA | homologous HL_6CZR_087 NA | |
| HL_11GG_017 | 1/C/780:790 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_11GG_018 | 1/C/834:840 | No text annotation | ||
| HL_11GG_019 | 1/C/856:861 | GNRA | homologous HL_6CZR_090 NA | |
| HL_11GG_020 | 1/C/891:896 | GNRA | homologous HL_6CZR_091 NA | |
| HL_11GG_021 | 1/C/957:966 | No text annotation | homologous HL_6CZR_092 NA | |
| HL_11GG_022 | 1/C/1006:1011 | No text annotation | homologous HL_6CZR_217 NA | |
| HL_11GG_024 | 1/C/1069:1076 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.3 | |
| HL_11GG_025 | 1/C/1083:1090 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_11GG_026 | 1/C/1128:1134 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_11GG_027 | 1/C/1158:1167 | No text annotation | ||
| HL_11GG_028 | 1/C/1259:1264 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_11GG_029 | 1/C/1308:1317 | T-loop with 3 stacked bulged bases | homologous HL_6CZR_100 NA | |
| HL_11GG_030 | 1/C/1350:1360 | No text annotation | homologous HL_6CZR_101 NA | |
| HL_11GG_031 | 1/C/1443:1448 | GNRA | geometric HL_7A0S_015 HL_34789.5 | |
| HL_11GG_032 | 1/C/1509:1514 | GNRA | homologous HL_6CZR_103 NA | |
| HL_11GG_033 | 1/I/59:68 | No text annotation | geometric HL_8B0X_033 HL_35677.5 | |
| HL_11GG_034 | 1/I/86:96 | No text annotation | ||
| HL_11GG_035 | 1/I/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.3 | |
| HL_11GG_037 | 1/I/158:168 | No text annotation | ||
| HL_11GG_038 | 1/I/194:201 | No text annotation | homologous HL_7A0S_006 HL_48677.2 | |
| HL_11GG_039 | 1/I/225:230 | No text annotation | homologous HL_7A0S_007 HL_91813.1 | |
| HL_11GG_040 | 1/I/246:252 | No text annotation | homologous HL_7A0S_008 HL_76371.3 | |
| HL_11GG_041 | 1/I/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.4 | |
| HL_11GG_042 | 1/I/319:323 | No text annotation | geometric HL_8B0X_042 HL_75660.9 | |
| HL_11GG_043 | 1/I/327:335 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.5 | |
| HL_11GG_044 | 1/I/382:392 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_11GG_045 | 1/I/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_11GG_046 | 1/I/462:467 | GNRA | homologous HL_7A0S_015 HL_34789.5 | |
| HL_11GG_047 | 1/I/487:493 | GNRA | homologous HL_7A0S_016 HL_34789.5 | |
| HL_11GG_048 | 1/I/542:551 | No text annotation | ||
| HL_11GG_049 | 1/I/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.5 | |
| HL_11GG_050 | 1/I/611:617 | No text annotation | geometric HL_9E6Q_019 HL_42293.1 | |
| HL_11GG_051 | 1/I/629:634 | GNRA | homologous HL_7A0S_020 HL_34789.5 | |
| HL_11GG_052 | 1/I/641:647 | No text annotation | ||
| HL_11GG_053 | 1/I/712:719 | GNRA with tandem sheared | geometric HL_5AOX_001 HL_98423.4 | |
| HL_11GG_054 | 1/I/744:753 | No text annotation | homologous HL_7A0S_022 HL_50204.2 | |
| HL_11GG_055 | 1/I/779:785 | No text annotation | geometric HL_8B0X_054 HL_79773.1 | |
| HL_11GG_056 | 1/I/826:831 | No text annotation | homologous HL_7A0S_024 HL_27530.2 | |
| HL_11GG_057 | 1/I/955:962 | GNRA | homologous HL_7A0S_026 HL_34789.5 | |
| HL_11GG_058 | 1/I/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.2 | |
| HL_11GG_062 | 1/I/1222:1227 | GNRA | homologous HL_7A0S_031 HL_34789.5 | |
| HL_11GG_063 | 1/I/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.5 | |
| HL_11GG_064 | 1/I/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_11GG_065 | 1/I/1363:1368 | GNRA variation | homologous HL_7A0S_034 HL_34789.5 | |
| HL_11GG_066 | 1/I/1389:1398 | No text annotation | homologous HL_7A0S_035 HL_77449.2 | |
| HL_11GG_067 | 1/I/1451:1459 | No text annotation | ||
| HL_11GG_068 | 1/I/1492:1498 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_11GG_070 | 1/I/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.4 | |
| HL_11GG_071 | 1/I/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_28592.3 | |
| HL_11GG_072 | 1/I/1630:1636 | No text annotation | geometric HL_8B0X_069 HL_34789.5 | |
| HL_11GG_073 | 1/I/1691:1696 | UNCG | homologous HL_7A0S_042 HL_61337.5 | |
| HL_11GG_075 | 1/I/1752:1756 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_11GG_076 | 1/I/1777:1787 | No text annotation | geometric HL_9E6Q_045 HL_87681.2 | |
| HL_11GG_077 | 1/I/1806:1811 | GNRA | homologous HL_7A0S_046 HL_93535.3 | |
| HL_11GG_079 | 1/I/1910:1920 | No text annotation | geometric HL_9H3G_052 HL_82185.2 | |
| HL_11GG_080 | 1/I/1949:1957 | No text annotation | homologous HL_7A0S_048 HL_33350.1 | |
| HL_11GG_081 | 1/I/2027:2036 | No text annotation | homologous HL_7A0S_049 HL_78372.2 | |
| HL_11GG_083 | 1/I/2209:2215 | No text annotation | geometric HL_8B0X_079 HL_42293.1 | |
| HL_11GG_084 | 1/I/2248:2256 | LSU P loop | homologous HL_7A0S_052 HL_11974.3 | |
| HL_11GG_085 | 1/I/2264:2276 | No text annotation | homologous HL_7A0S_053 HL_02042.2 | |
| HL_11GG_087 | 1/I/2355:2362 | GNRA with extra cWW | homologous HL_7A0S_056 HL_87268.3 | |
| HL_11GG_088 | 1/I/2374:2379 | GNRA | homologous HL_7A0S_057 HL_34789.5 | |
| HL_11GG_089 | 1/I/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_11GG_090 | 1/I/2470:2480 | No text annotation | ||
| HL_11GG_092 | 1/I/2551:2557 | LSU A loop | homologous HL_7A0S_061 HL_48677.2 | |
| HL_11GG_093 | 1/I/2594:2599 | GNRA | homologous HL_7A0S_062 HL_34789.5 | |
| HL_11GG_095 | 1/I/2699:2708 | No text annotation | ||
| HL_11GG_096 | 1/I/2746:2759 | No text annotation | ||
| HL_11GG_097 | 1/I/2796:2799 | No text annotation | geometric HL_9H3G_008 HL_90436.4 | |
| HL_11GG_098 | 1/I/2819:2827 | No text annotation | homologous HL_7A0S_067 HL_37889.2 | |
| HL_11GG_099 | 1/I/2856:2861 | GNRA | homologous HL_7A0S_068 HL_34789.5 | |
| HL_11GG_101 | 1/J/86:90 | Mini UNCG with extended bulge | geometric HL_7A0S_017 HL_90436.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_11GG_002 | No text annotation | ||
| HL_11GG_005 | No text annotation | ||
| HL_11GG_012 | No text annotation | ||
| HL_11GG_023 | No text annotation | ||
| HL_11GG_036 | UNCG | ||
| HL_11GG_059 | No text annotation | ||
| HL_11GG_060 | No text annotation | ||
| HL_11GG_061 | No text annotation | ||
| HL_11GG_069 | No text annotation | ||
| HL_11GG_074 | No text annotation | ||
| HL_11GG_078 | GNRA | ||
| HL_11GG_082 | No text annotation | ||
| HL_11GG_086 | No text annotation | ||
| HL_11GG_091 | GNRA variation | ||
| HL_11GG_094 | GNRA | ||
| HL_11GG_100 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_11GG_001 | 1/C/30:32, 1/C/546:547 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_11GG_002 | 1/C/44:45, 1/C/390:392 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_11GG_003 | 1/C/47:52, 1/C/353:355 | No text annotation | geometric IL_8B0X_003 IL_32983.2 | |
| IL_11GG_004 | 1/C/54:56, 1/C/350:351 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_11GG_005 | 1/C/63:66, 1/C/97:98 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_11GG_006 | 1/C/67:70, 1/C/93:96 | No text annotation | geometric IL_8GLP_310 IL_15225.3 | |
| IL_11GG_007 | 1/C/70:75, 1/C/88:93 | Quadruple sheared | geometric IL_3FTE_001 IL_29495.2 | |
| IL_11GG_008 | 1/C/122:125, 1/C/225:227 | No text annotation | geometric IL_8B0X_009 IL_76400.2 | |
| IL_11GG_009 | 1/C/126:130, 1/C/221:224 | Minor groove platform related | homologous IL_6CZR_120 NA | |
| IL_11GG_010 | 1/C/197:201, 1/C/206:208 | No text annotation | ||
| IL_11GG_011 | 1/C/236:241, 1/C/271:278 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_11GG_012 | 1/C/243:246, 1/C/268:269 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_11GG_013 | 1/C/286:287, 1/C/298:302 | C-loop | homologous IL_6CZR_125 NA | |
| IL_11GG_014 | 1/C/361:363, 1/C/386:387 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_11GG_015 | 1/C/365:369, 1/C/383:384 | C-loop | homologous IL_6CZR_127 NA | |
| IL_11GG_016 | 1/C/369:370, 1/C/381:383 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_11GG_017 | 1/C/403:410, 1/C/421:427 | No text annotation | homologous IL_6CZR_359 NA | |
| IL_11GG_018 | 1/C/440:446, 1/C/473:482 | No text annotation | ||
| IL_11GG_019 | 1/C/448:450, 1/C/470:471 | Single stack bend | geometric IL_7MLX_001 IL_15011.4 | |
| IL_11GG_020 | 1/C/498:505, 1/C/534:535 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_11GG_021 | 1/C/509:515, 1/C/522:530 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_11GG_022 | 1/C/563:569, 1/C/874:875 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_11GG_023 | 1/C/574:578, 1/C/751:755 | tSH-tWH-tHS | homologous IL_6CZR_135 NA | |
| IL_11GG_024 | 1/C/587:590, 1/C/638:640 | No text annotation | geometric IL_7SZU_003 IL_75527.3 | |
| IL_11GG_025 | 1/C/591:592, 1/C/634:637 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_11GG_026 | 1/C/599:606, 1/C/622:627 | No text annotation | homologous IL_6CZR_408 NA | |
| IL_11GG_027 | 1/C/648:649, 1/C/745:748 | No text annotation | geometric IL_8B0X_030 IL_74641.3 | |
| IL_11GG_028 | 1/C/652:653, 1/C/740:742 | Single stack bend | geometric IL_7MLX_001 IL_15011.4 | |
| IL_11GG_029 | 1/C/656:660, 1/C/734:737 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_11GG_030 | 1/C/667:671, 1/C/707:711 | Triple non-canonical cWW pairs | homologous IL_6CZR_409 NA | |
| IL_11GG_031 | 1/C/678:682, 1/C/693:700 | Kink-turn | geometric IL_8B0X_034 IL_71972.2 | |
| IL_11GG_032 | 1/C/768:772, 1/C/798:799 | Left turn | homologous IL_6CZR_144 NA | |
| IL_11GG_033 | 1/C/773:777, 1/C/793:797 | tSH-tWH-tHS | homologous IL_6CZR_145 NA | |
| IL_11GG_034 | 1/C/881:888, 1/C/899:904 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA | |
| IL_11GG_035 | 1/C/916:917, 1/C/1387:1389 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_11GG_036 | 1/C/919:921, 1/C/1384:1385 | Single bulged G | homologous IL_6CZR_148 NA | |
| IL_11GG_037 | 1/C/927:929, 1/C/1374:1378 | No text annotation | homologous IL_6CZR_410 NA | |
| IL_11GG_038 | 1/C/947:948, 1/C/1220:1222 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_11GG_039 | 1/C/987:992, 1/C/1037:1039 | No text annotation | ||
| IL_11GG_040 | 1/C/992:995, 1/C/1033:1037 | No text annotation | ||
| IL_11GG_041 | 1/C/1042:1044, 1/C/1202:1203 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_11GG_042 | 1/C/1046:1050, 1/C/1198:1200 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_11GG_043 | 1/C/1051:1052, 1/C/1193:1197 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_11GG_044 | 1/C/1054:1055, 1/C/1189:1191 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_11GG_045 | 1/C/1055:1057, 1/C/1187:1189 | Isolated non-canonical cWW pair | homologous IL_6CZR_157 NA | |
| IL_11GG_046 | 1/C/1116:1122, 1/C/1138:1146 | No text annotation | ||
| IL_11GG_047 | 1/C/1123:1126, 1/C/1136:1137 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_55206.2 | |
| IL_11GG_048 | 1/C/1156:1158, 1/C/1167:1169 | Isolated non-canonical cWW pair | geometric IL_5MSF_001 IL_01003.5 | |
| IL_11GG_049 | 1/C/1240:1247, 1/C/1278:1285 | No text annotation | ||
| IL_11GG_050 | 1/C/1249:1252, 1/C/1271:1276 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_11GG_051 | 1/C/1253:1257, 1/C/1266:1270 | Triple sheared | geometric IL_2A64_006 IL_15190.3 | |
| IL_11GG_052 | 1/C/1297:1302, 1/C/1323:1328 | No text annotation | homologous IL_6CZR_164 NA | |
| IL_11GG_053 | 1/C/1393:1395, 1/C/1495:1498 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_11GG_054 | 1/C/1395:1398, 1/C/1491:1495 | No text annotation | homologous IL_6CZR_368 NA | |
| IL_11GG_055 | 1/C/1399:1401, 1/C/1488:1490 | No text annotation | geometric IL_8GLP_276 IL_01003.5 | |
| IL_11GG_056 | 1/C/1401:1403, 1/C/1485:1488 | No text annotation | geometric IL_9H3G_236 IL_29925.3 | |
| IL_11GG_057 | 1/C/1406:1408, 1/C/1480:1482 | Isolated non-canonical cWW pair | homologous IL_6CZR_411 NA | |
| IL_11GG_058 | 1/C/1410:1413, 1/C/1475:1478 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_11GG_059 | 1/C/1424:1429, 1/C/1460:1464 | No text annotation | geometric IL_8B0X_062 IL_47352.3 | |
| IL_11GG_060 | 1/C/1434:1436, 1/C/1454:1455 | Single bulged A | geometric IL_4V9F_032 IL_14190.3 | |
| IL_11GG_061 | 1/C/1439:1442, 1/C/1449:1451 | No text annotation | geometric IL_8B0X_064 IL_05502.1 | |
| IL_11GG_064 | 1/I/24:30, 1/I/510:516 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.2 | |
| IL_11GG_065 | 1/I/36:37, 1/I/442:444 | Single bulged A | homologous IL_7A0S_002 IL_14190.3 | |
| IL_11GG_066 | 1/I/43:44, 1/I/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_34520.4 | |
| IL_11GG_067 | 1/I/81:85, 1/I/97:105 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_11GG_068 | 1/I/183:184, 1/I/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.4 | |
| IL_11GG_069 | 1/I/188:194, 1/I/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.4 | |
| IL_11GG_070 | 1/I/239:245, 1/I/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8B0X_071 IL_02666.2 | |
| IL_11GG_071 | 1/I/269:281, 1/I/359:370 | No text annotation | ||
| IL_11GG_072 | 1/I/293:295, 1/I/343:347 | No text annotation | geometric IL_8B0X_074 IL_76658.1 | |
| IL_11GG_073 | 1/I/481:484, 1/I/496:509 | No text annotation | geometric IL_8B0X_075 IL_44923.2 | |
| IL_11GG_074 | 1/I/536:539, 1/I/554:557 | No text annotation | geometric IL_8B0X_076 IL_58355.3 | |
| IL_11GG_075 | 1/I/564:566, 1/I/575:577 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.4 | |
| IL_11GG_076 | 1/I/606:610, 1/I/618:622 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_11GG_077 | 1/I/672:674, 1/I/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.5 | |
| IL_11GG_078 | 1/I/674:678, 1/I/799:806 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.2 | |
| IL_11GG_079 | 1/I/697:698, 1/I/763:765 | Single bulged A | homologous IL_7A0S_016 IL_14190.3 | |
| IL_11GG_080 | 1/I/702:703, 1/I/728:730 | Single bulged G | homologous IL_7A0S_017 IL_28408.3 | |
| IL_11GG_081 | 1/I/703:707, 1/I/724:728 | No text annotation | ||
| IL_11GG_082 | 1/I/738:740, 1/I/757:758 | No text annotation | geometric IL_8B0X_084 IL_48076.9 | |
| IL_11GG_083 | 1/I/775:777, 1/I/787:791 | No text annotation | geometric IL_9E6Q_032 IL_89509.2 | |
| IL_11GG_084 | 1/I/844:847, 1/I/933:934 | No text annotation | geometric IL_8B0X_087 IL_79144.1 | |
| IL_11GG_085 | 1/I/844:848, 1/I/930:934 | No text annotation | geometric IL_8B0X_179 IL_01742.1 | |
| IL_11GG_086 | 1/I/847:848, 1/I/930:933 | No text annotation | geometric IL_8B0X_088 IL_36175.2 | |
| IL_11GG_087 | 1/I/850:851, 1/I/926:928 | No text annotation | geometric IL_8B0X_089 IL_15011.4 | |
| IL_11GG_088 | 1/I/856:862, 1/I/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_8B0X_090 IL_94128.2 | |
| IL_11GG_089 | 1/I/862:863, 1/I/913:915 | Minor groove platform | homologous IL_7A0S_028 IL_34520.4 | |
| IL_11GG_090 | 1/I/864:868, 1/I/909:912 | C-loop | homologous IL_7A0S_029 IL_16301.2 | |
| IL_11GG_091 | 1/I/870:873, 1/I/904:907 | No text annotation | ||
| IL_11GG_093 | 1/I/994:996, 1/I/1159:1160 | Single bulged C | homologous IL_7A0S_032 IL_05642.4 | |
| IL_11GG_094 | 1/I/998:1002, 1/I/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.2 | |
| IL_11GG_095 | 1/I/1004:1011, 1/I/1150:1151 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_46868.1 | |
| IL_11GG_096 | 1/I/1011:1013, 1/I/1149:1150 | Single bulged U | homologous IL_7A0S_035 IL_97561.6 | |
| IL_11GG_097 | 1/I/1018:1024, 1/I/1140:1144 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_11GG_098 | 1/I/1024:1030, 1/I/1124:1140 | No text annotation | ||
| IL_11GG_099 | 1/I/1031:1034, 1/I/1121:1123 | No text annotation | ||
| IL_11GG_101 | 1/I/1038:1042, 1/I/1114:1117 | No text annotation | ||
| IL_11GG_105 | 1/I/1196:1198, 1/I/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.6 | |
| IL_11GG_106 | 1/I/1202:1206, 1/I/1240:1243 | No text annotation | ||
| IL_11GG_107 | 1/I/1208:1215, 1/I/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_11GG_108 | 1/I/1262:1269, 1/I/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.4 | |
| IL_11GG_109 | 1/I/1310:1313, 1/I/1603:1604 | No text annotation | geometric IL_8B0X_109 IL_74641.3 | |
| IL_11GG_110 | 1/I/1319:1323, 1/I/1331:1333 | C-loop | homologous IL_7A0S_047 IL_06671.2 | |
| IL_11GG_111 | 1/I/1351:1355, 1/I/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_11GG_112 | 1/I/1357:1361, 1/I/1370:1374 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.2 | |
| IL_11GG_115 | 1/I/1432:1435, 1/I/1557:1561 | No text annotation | geometric IL_8B0X_115 IL_28284.1 | |
| IL_11GG_116 | 1/I/1437:1440, 1/I/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_74317.1 | |
| IL_11GG_118 | 1/I/1468:1471, 1/I/1520:1524 | No text annotation | geometric IL_8B0X_118 IL_68574.5 | |
| IL_11GG_119 | 1/I/1474:1478, 1/I/1513:1517 | Double sheared with near cWW | homologous IL_7A0S_056 IL_87767.3 | |
| IL_11GG_120 | 1/I/1481:1482, 1/I/1507:1510 | No text annotation | geometric IL_8B0X_120 IL_52564.1 | |
| IL_11GG_121 | 1/I/1487:1491, 1/I/1499:1502 | No text annotation | ||
| IL_11GG_122 | 1/I/1526:1529, 1/I/1542:1546 | No text annotation | geometric IL_9E6Q_021 IL_45790.2 | |
| IL_11GG_123 | 1/I/1651:1656, 1/I/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_11GG_124 | 1/I/1663:1665, 1/I/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.2 | |
| IL_11GG_125 | 1/I/1666:1669, 1/I/1993:1994 | No text annotation | geometric IL_9E6Q_063 IL_74641.3 | |
| IL_11GG_126 | 1/I/1666:1674, 1/I/1990:1994 | No text annotation | geometric IL_4WF9_117 IL_80252.2 | |
| IL_11GG_127 | 1/I/1669:1674, 1/I/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.2 | |
| IL_11GG_128 | 1/I/1686:1691, 1/I/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.2 | |
| IL_11GG_129 | 1/I/1712:1718, 1/I/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_8B0X_128 IL_82100.1 | |
| IL_11GG_130 | 1/I/1720:1724, 1/I/1736:1740 | No text annotation | geometric IL_8B0X_129 IL_70744.1 | |
| IL_11GG_131 | 1/I/1727:1728, 1/I/1731:1733 | No text annotation | ||
| IL_11GG_132 | 1/I/1770:1771, 1/I/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_14190.3 | |
| IL_11GG_133 | 1/I/1798:1804, 1/I/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_11GG_134 | 1/I/1837:1840, 1/I/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.2 | |
| IL_11GG_135 | 1/I/1841:1842, 1/I/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.2 | |
| IL_11GG_136 | 1/I/1846:1849, 1/I/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_73108.3 | |
| IL_11GG_137 | 1/I/1851:1860, 1/I/1882:1891 | No text annotation | ||
| IL_11GG_138 | 1/I/1864:1867, 1/I/1874:1878 | No text annotation | ||
| IL_11GG_139 | 1/I/1933:1934, 1/I/1964:1967 | No text annotation | geometric IL_8B0X_137 IL_24886.3 | |
| IL_11GG_140 | 1/I/1934:1945, 1/I/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_11GG_141 | 1/I/2050:2052, 1/I/2617:2618 | Major groove platform | homologous IL_7A0S_073 IL_48076.9 | |
| IL_11GG_142 | 1/I/2054:2056, 1/I/2612:2615 | No text annotation | geometric IL_8B0X_140 IL_80025.2 | |
| IL_11GG_143 | 1/I/2067:2069, 1/I/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.6 | |
| IL_11GG_144 | 1/I/2070:2071, 1/I/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_34520.4 | |
| IL_11GG_145 | 1/I/2081:2083, 1/I/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.3 | |
| IL_11GG_146 | 1/I/2085:2087, 1/I/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.4 | |
| IL_11GG_151 | 1/I/2202:2204, 1/I/2220:2221 | No text annotation | geometric IL_8B0X_146 IL_97561.6 | |
| IL_11GG_152 | 1/I/2283:2299, 1/I/2317:2325 | No text annotation | ||
| IL_11GG_153 | 1/I/2326:2330, 1/I/2385:2389 | No text annotation | ||
| IL_11GG_154 | 1/I/2350:2353, 1/I/2364:2367 | Double sheared | homologous IL_7A0S_081 IL_58355.3 | |
| IL_11GG_155 | 1/I/2400:2403, 1/I/2414:2416 | Isolated cWH basepair | geometric IL_8CRE_432 IL_10892.3 | |
| IL_11GG_156 | 1/I/2453:2454, 1/I/2498:2500 | Single stack bend | homologous IL_7A0S_083 IL_15011.4 | |
| IL_11GG_157 | 1/I/2454:2455, 1/I/2496:2498 | Major groove platform | homologous IL_7A0S_084 IL_48076.9 | |
| IL_11GG_158 | 1/I/2457:2459, 1/I/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.9 | |
| IL_11GG_159 | 1/I/2459:2461, 1/I/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.3 | |
| IL_11GG_160 | 1/I/2466:2470, 1/I/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.3 | |
| IL_11GG_161 | 1/I/2507:2508, 1/I/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.3 | |
| IL_11GG_162 | 1/I/2510:2512, 1/I/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.5 | |
| IL_11GG_163 | 1/I/2512:2513, 1/I/2571:2574 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.3 | |
| IL_11GG_164 | 1/I/2522:2527, 1/I/2536:2543 | No text annotation | ||
| IL_11GG_165 | 1/I/2591:2592, 1/I/2601:2603 | No text annotation | geometric IL_8B0X_159 IL_14190.3 | |
| IL_11GG_166 | 1/I/2636:2640, 1/I/2774:2782 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_11GG_167 | 1/I/2652:2658, 1/I/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_11GG_168 | 1/I/2680:2684, 1/I/2725:2727 | C-loop | homologous IL_7A0S_095 IL_63596.13 | |
| IL_11GG_169 | 1/I/2687:2691, 1/I/2718:2722 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_11GG_170 | 1/I/2695:2696, 1/I/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.3 | |
| IL_11GG_171 | 1/I/2737:2742, 1/I/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_11GG_173 | 1/I/2795:2796, 1/I/2799:2801 | No text annotation | ||
| IL_11GG_174 | 1/I/2806:2811, 1/I/2889:2892 | No text annotation | ||
| IL_11GG_175 | 1/I/2838:2839, 1/I/2878:2880 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.3 | |
| IL_11GG_176 | 1/I/2843:2846, 1/I/2870:2874 | No text annotation | geometric IL_8B0X_169 IL_60988.3 | |
| IL_11GG_177 | 1/I/2847:2852, 1/I/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_48489.2 | |
| IL_11GG_181 | 1/J/33:38, 1/J/44:49 | No text annotation | ||
| IL_11GG_182 | 1/J/71:79, 1/J/97:105 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_11GG_062 | No text annotation | ||
| IL_11GG_063 | Isolated non-canonical cWW pair | ||
| IL_11GG_092 | No text annotation | ||
| IL_11GG_100 | Tandem non-canonical cWW pairs | ||
| IL_11GG_102 | Isolated non-canonical cWW pair | ||
| IL_11GG_103 | No text annotation | ||
| IL_11GG_104 | No text annotation | ||
| IL_11GG_113 | No text annotation | ||
| IL_11GG_114 | UAA/GAN | ||
| IL_11GG_117 | Single bulged U | ||
| IL_11GG_147 | No text annotation | ||
| IL_11GG_148 | No text annotation | ||
| IL_11GG_149 | No text annotation | ||
| IL_11GG_150 | No text annotation | ||
| IL_11GG_172 | No text annotation | ||
| IL_11GG_178 | Major groove intercalation | ||
| IL_11GG_179 | No text annotation | ||
| IL_11GG_180 | Major groove minor groove platform; mini C-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_11GG_001 | 1/C/46:47, 1/C/355:361, 1/C/387:389 | No text annotation | geometric J3_8B0X_001 J3_58657.2 | |
| J3_11GG_002 | 1/C/46:52, 1/C/353:361, 1/C/387:389 | No text annotation | homologous J3_6CZR_058 NA | |
| J3_11GG_003 | 1/C/580:582, 1/C/645:648, 1/C/748:749 | No text annotation | geometric J3_8B0X_002 J3_01633.2 | |
| J3_11GG_004 | 1/C/580:582, 1/C/645:649, 1/C/745:749 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_11GG_005 | 1/C/666:667, 1/C/711:719, 1/C/726:728 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_11GG_006 | 1/C/820:823, 1/C/851:855, 1/C/862:868 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_11GG_007 | 1/C/930:933, 1/C/1338:1344, 1/C/1366:1373 | No text annotation | homologous J3_6CZR_061 NA | |
| J3_11GG_008 | 1/C/937:940, 1/C/1229:1231, 1/C/1331:1334 | No text annotation | homologous J3_6CZR_019 NA | |
| J3_11GG_009 | 1/C/949:956, 1/C/967:978, 1/C/1215:1219 | No text annotation | geometric J3_4LFB_004 J3_88451.2 | |
| J3_11GG_010 | 1/C/984:987, 1/C/1039:1041, 1/C/1204:1209 | No text annotation | geometric J3_8B0X_008 J3_84394.1 | |
| J3_11GG_011 | 1/C/984:992, 1/C/1037:1041, 1/C/1204:1209 | No text annotation | ||
| J3_11GG_012 | 1/C/997:1004, 1/C/1013:1021, 1/C/1028:1031 | No text annotation | ||
| J3_11GG_013 | 1/C/1057:1062, 1/C/1101:1107, 1/C/1181:1187 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_11GG_014 | 1/C/1067:1068, 1/C/1077:1080, 1/C/1093:1096 | No text annotation | homologous J3_6CZR_079 NA | |
| J3_11GG_015 | 1/C/1110:1114, 1/C/1148:1156, 1/C/1169:1178 | No text annotation | ||
| J3_11GG_016 | 1/C/1231:1235, 1/C/1290:1297, 1/C/1328:1331 | No text annotation | homologous J3_6CZR_026 NA | |
| J3_11GG_017 | 1/I/30:31, 1/I/474:481, 1/I/509:510 | No text annotation | geometric J3_8B0X_014 J3_68715.2 | |
| J3_11GG_018 | 1/I/30:31, 1/I/474:484, 1/I/496:510 | No text annotation | homologous J3_7A0S_015 J3_17917.2 | |
| J3_11GG_019 | 1/I/32:35, 1/I/445:461, 1/I/468:473 | No text annotation | homologous J3_7A0S_016 J3_07616.2 | |
| J3_11GG_020 | 1/I/56:57, 1/I/70:76, 1/I/110:114 | No text annotation | homologous J3_7A0S_002 J3_01004.2 | |
| J3_11GG_021 | 1/I/297:301, 1/I/316:325, 1/I/337:341 | No text annotation | geometric J3_8B0X_034 J3_77124.1 | |
| J3_11GG_022 | 1/I/683:689, 1/I/773:775, 1/I/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.2 | |
| J3_11GG_023 | 1/I/698:700, 1/I/732:736, 1/I/760:763 | No text annotation | homologous J3_7A0S_005 J3_69816.2 | |
| J3_11GG_025 | 1/I/1298:1303, 1/I/1625:1627, 1/I/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_11GG_026 | 1/I/1306:1309, 1/I/1605:1611, 1/I/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_11GG_027 | 1/I/1344:1349, 1/I/1382:1385, 1/I/1402:1403 | No text annotation | ||
| J3_11GG_028 | 1/I/1424:1429, 1/I/1564:1565, 1/I/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_11GG_029 | 1/I/2091:2093, 1/I/2196:2200, 1/I/2223:2228 | No text annotation | homologous J3_7A0S_009 J3_17460.1 | |
| J3_11GG_030 | 1/I/2330:2347, 1/I/2370:2373, 1/I/2380:2385 | No text annotation | ||
| J3_11GG_031 | 1/I/2517:2520, 1/I/2545:2547, 1/I/2561:2567 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_11GG_032 | 1/I/2789:2791, 1/I/2805:2806, 1/I/2892:2894 | No text annotation | ||
| J3_11GG_033 | 1/I/2812:2815, 1/I/2831:2836, 1/I/2882:2888 | No text annotation | ||
| J4_11GG_001 | 1/C/109:116, 1/C/233:234, 1/C/280:283, 1/C/305:306 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_11GG_002 | 1/C/137:147, 1/C/162:180, 1/C/185:192, 1/C/213:214 | No text annotation | ||
| J4_11GG_003 | 1/C/569:571, 1/C/758:763, 1/C/804:815, 1/C/873:874 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_11GG_004 | 1/I/297:301, 1/I/316:319, 1/I/323:325, 1/I/337:341 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_11GG_005 | 1/I/601:604, 1/I/624:628, 1/I/635:638, 1/I/650:656 | No text annotation | ||
| J4_11GG_006 | 1/I/1270:1276, 1/I/1294:1295, 1/I/1645:1648, 1/I/2009:2010 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_11GG_007 | 1/I/1310:1314, 1/I/1338:1343, 1/I/1404:1405, 1/I/1597:1604 | No text annotation | ||
| J4_11GG_008 | 1/I/1313:1314, 1/I/1338:1343, 1/I/1404:1405, 1/I/1597:1603 | No text annotation | homologous J4_7A0S_006 J4_48150.2 | |
| J4_11GG_009 | 1/I/1444:1445, 1/I/1466:1467, 1/I/1525:1526, 1/I/1546:1547 | No text annotation | ||
| J4_11GG_010 | 1/I/1772:1776, 1/I/1788:1792, 1/I/1827:1830, 1/I/1975:1979 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_11GG_011 | 1/I/1833:1835, 1/I/1905:1906, 1/I/1924:1933, 1/I/1967:1972 | No text annotation | ||
| J4_11GG_012 | 1/I/2282:2283, 1/I/2325:2326, 1/I/2389:2395, 1/I/2421:2427 | No text annotation | ||
| J4_11GG_013 | 1/I/2643:2646, 1/I/2674:2676, 1/I/2731:2735, 1/I/2769:2771 | No text annotation | ||
| J5_11GG_001 | 1/C/36:39, 1/C/397:400, 1/C/430:437, 1/C/485:494, 1/C/539:542 | No text annotation | ||
| J5_11GG_002 | 1/C/58:61, 1/C/100:107, 1/C/308:310, 1/C/331:333, 1/C/344:348 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_11GG_003 | 1/I/47:54, 1/I/116:122, 1/I/129:131, 1/I/148:150, 1/I/176:178 | No text annotation | ||
| J5_11GG_004 | 1/I/531:533, 1/I/560:564, 1/I/577:579, 1/I/1261:1262, 1/I/2017:2018 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_11GG_005 | 1/I/584:589, 1/I/668:671, 1/I/809:812, 1/I/1195:1196, 1/I/1250:1256 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_11GG_006 | 1/I/1674:1682, 1/I/1706:1707, 1/I/1751:1752, 1/I/1756:1764, 1/I/1988:1990 | No text annotation | homologous J5_7A0S_005 J5_99177.2 | |
| J5_11GG_007 | 1/I/2057:2064, 1/I/2446:2453, 1/I/2500:2507, 1/I/2582:2588, 1/I/2606:2611 | No text annotation | ||
| J5_11GG_008 | 1/I/2074:2077, 1/I/2243:2246, 1/I/2258:2259, 1/I/2281:2282, 1/I/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J7_11GG_001 | 1/I/6:15, 1/I/525:531, 1/I/2018:2023, 1/I/2040:2043, 1/I/2625:2630, 1/I/2788:2789, 1/I/2894:2898 | No text annotation | ||
| J7_11GG_002 | 1/I/817:822, 1/I/835:838, 1/I/940:946, 1/I/971:976, 1/I/987:991, 1/I/1163:1164, 1/I/1185:1190 | No text annotation | ||
| J7_11GG_003 | 1/I/2074:2077, 1/I/2243:2246, 1/I/2258:2259, 1/I/2281:2283, 1/I/2325:2326, 1/I/2389:2395, 1/I/2421:2435 | No text annotation | ||
| J8_11GG_001 | 1/I/45:46, 1/I/179:183, 1/I/214:224, 1/I/231:235, 1/I/262:269, 1/I/370:375, 1/I/399:406, 1/I/421:433 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_11GG_024 | No text annotation | ||
| J3_11GG_034 | No text annotation |
Coloring options: