HL_11GG_006

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGUAAAGGC

Length

9 nucleotides

Bulged bases

11GG|1|C|G|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_006 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.3109

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11GG|1|C|G|253
11GG|1|C|G|254
11GG|1|C|U|255
11GG|1|C|A|256
11GG|1|C|A|257
11GG|1|C|A|258
11GG|1|C|G|259
11GG|1|C|G|260
11GG|1|C|C|261

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS20

Chain y

Small ribosomal subunit protein uS17