HL_11GG_008

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2572

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

11GG|1|C|A|314
11GG|1|C|A|315
11GG|1|C|C|316
11GG|1|C|U|317
11GG|1|C|G|318
11GG|1|C|A|319
11GG|1|C|G|320
11GG|1|C|A|321
11GG|1|C|C|322
11GG|1|C|A|323
11GG|1|C|C|324
11GG|1|C|G|325
11GG|1|C|G|326
11GG|1|C|U|327

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS20

Chain x

Small ribosomal subunit protein bS16