HL_11GG_011

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

11GG|1|C|U|415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_011 not in the Motif Atlas

Homologous match to HL_6CZR_082

Geometric discrepancy: 0.332

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

11GG|1|C|C|413
11GG|1|C|U|414
11GG|1|C|U|415
11GG|1|C|C|416
11GG|1|C|G|417
11GG|1|C|G|418

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS3

Chain F

Small ribosomal subunit protein uS4