HL_11GG_013

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_013 not in the Motif Atlas

Homologous match to HL_6CZR_216

Geometric discrepancy: 0.2296

The information below is about HL_6CZR_216

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11GG|1|C|C|516
11GG|1|C|A|517
11GG|1|C|G|518
11GG|1|C|C|519
11GG|1|C|C|520
11GG|1|C|G|521

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S12