HL_11GG_021

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

11GG|1|C|G|965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_021 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.2414

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11GG|1|C|G|957
11GG|1|C|A|958
11GG|1|C|A|959
11GG|1|C|G|960
11GG|1|C|C|961
11GG|1|C|A|962
11GG|1|C|A|963
11GG|1|C|C|964
11GG|1|C|G|965
11GG|1|C|C|966

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein uS9

Chain q

Small ribosomal subunit protein uS10

Chain u

Small ribosomal subunit protein uS13