HL_11GG_022

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_022 not in the Motif Atlas

Homologous match to HL_6CZR_217

Geometric discrepancy: 0.3458

The information below is about HL_6CZR_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11GG|1|C|A|1006
11GG|1|C|G|1007
11GG|1|C|A|1008
11GG|1|C|G|1009
11GG|1|C|A|1010
11GG|1|C|U|1011

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 1

Small ribosomal subunit protein uS19

Chain v

Small ribosomal subunit protein uS14