HL_11GG_024

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UCGUGAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_024 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3054

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

11GG|1|C|U|1069
11GG|1|C|C|1070
11GG|1|C|G|1071
11GG|1|C|U|1072
11GG|1|C|G|1073
11GG|1|C|A|1074
11GG|1|C|G|1075
11GG|1|C|A|1076

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS2

Chain G

Small ribosomal subunit protein uS5