HL_11GG_057

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

11GG|1|I|U|958, 11GG|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_057 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1798

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

11GG|1|I|PSU|955
11GG|1|I|G|956
11GG|1|I|C|957
11GG|1|I|U|958
11GG|1|I|A|959
11GG|1|I|A|960
11GG|1|I|C|961
11GG|1|I|G|962

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain U

Large ribosomal subunit protein uL16