HL_11GG_065

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_065 not in the Motif Atlas

Homologous match to HL_7A0S_034

Geometric discrepancy: 0.2052

The information below is about HL_7A0S_034

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

11GG|1|I|C|1363
11GG|1|I|G|1364
11GG|1|I|A|1365
11GG|1|I|A|1366
11GG|1|I|A|1367
11GG|1|I|G|1368

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L28

Chain k

50S ribosomal protein L34