HL_11GG_066

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

11GG|1|I|U|1396, 11GG|1|I|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_066 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.331

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

11GG|1|I|G|1389
11GG|1|I|U|1390
11GG|1|I|U|1391
11GG|1|I|A|1392
11GG|1|I|A|1393
11GG|1|I|U|1394
11GG|1|I|A|1395
11GG|1|I|U|1396
11GG|1|I|U|1397
11GG|1|I|C|1398

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23