HL_11GG_098

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

11GG|1|I|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_098 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1483

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

11GG|1|I|G|2819
11GG|1|I|A|2820
11GG|1|I|A|2821
11GG|1|I|G|2822
11GG|1|I|A|2823
11GG|1|I|C|2824
11GG|1|I|G|2825
11GG|1|I|A|2826
11GG|1|I|C|2827

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL3

Chain V

Large ribosomal subunit protein bL17