HL_11HE_013

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

11HE|1|28|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_013 not in the Motif Atlas

Homologous match to HL_9PN5_014

Geometric discrepancy: 0.0743

The information below is about HL_9PN5_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

11HE|1|28|U|1317
11HE|1|28|C|1318
11HE|1|28|U|1319
11HE|1|28|U|1320
11HE|1|28|G|1321
11HE|1|28|A|1322
11HE|1|28|A|1323
11HE|1|28|A|1324
11HE|1|28|C|1325
11HE|1|28|A|1326

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L3

60S ribosomal protein L3

Chain dd

60S ribosomal protein L27a