HL_11HE_060

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

11HE|1|28|G|4694, 11HE|1|28|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_060 not in the Motif Atlas

Homologous match to HL_9PN5_065

Geometric discrepancy: 0.0642

The information below is about HL_9PN5_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

11HE|1|28|C|4688
11HE|1|28|U|4689
11HE|1|28|G|4690
11HE|1|28|A|4691
11HE|1|28|A|4692
11HE|1|28|C|4693
11HE|1|28|G|4694
11HE|1|28|C|4695
11HE|1|28|C|4696
11HE|1|28|U|4697
11HE|1|28|C|4698
11HE|1|28|U|4699
11HE|1|28|A|4700
11HE|1|28|A|4701
11HE|1|28|G|4702

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain L9

60S ribosomal protein L9

Chain bb

Large ribosomal subunit protein uL13