HL_11HG_009

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

11HG|1|18|C|450, 11HG|1|18|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_009 not in the Motif Atlas

Homologous match to HL_9PN5_086

Geometric discrepancy: 0.1573

The information below is about HL_9PN5_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.3

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

11HG|1|18|C|441
11HG|1|18|C|442
11HG|1|18|U|443
11HG|1|18|G|444
11HG|1|18|A|445
11HG|1|18|G|446
11HG|1|18|A|447
11HG|1|18|A|448
11HG|1|18|A|449
11HG|1|18|C|450
11HG|1|18|G|451
11HG|1|18|G|452

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8

Chain SS

40S ribosomal protein S24