HL_11HG_011

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

11HG|1|18|A|500, 11HG|1|18|C|502, 11HG|1|18|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_011 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.2406

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

11HG|1|18|C|498
11HG|1|18|G|499
11HG|1|18|A|500
11HG|1|18|C|501
11HG|1|18|C|502
11HG|1|18|C|503
11HG|1|18|G|504

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain SS

40S ribosomal protein S24