HL_11HG_046

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

11HG|1|28|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_046 not in the Motif Atlas

Homologous match to HL_9PN5_014

Geometric discrepancy: 0.0947

The information below is about HL_9PN5_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

11HG|1|28|U|1317
11HG|1|28|C|1318
11HG|1|28|U|1319
11HG|1|28|U|1320
11HG|1|28|G|1321
11HG|1|28|A|1322
11HG|1|28|A|1323
11HG|1|28|A|1324
11HG|1|28|C|1325
11HG|1|28|A|1326

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L3

60S ribosomal protein L3

Chain dd

60S ribosomal protein L27a