HL_11HG_051

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

11HG|1|28|A|1630, 11HG|1|28|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_051 not in the Motif Atlas

Homologous match to HL_8GLP_024

Geometric discrepancy: 0.0702

The information below is about HL_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

11HG|1|28|G|1627
11HG|1|28|C|1628
11HG|1|28|G|1629
11HG|1|28|A|1630
11HG|1|28|A|1631
11HG|1|28|A|1632
11HG|1|28|G|1633
11HG|1|28|A|1634
11HG|1|28|C|1635

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain 37

60S ribosomal protein L37

Chain L8

60S ribosomal protein L8