HL_11HG_071

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

11HG|1|28|C|2794, 11HG|1|28|G|2796, 11HG|1|28|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_071 not in the Motif Atlas

Homologous match to HL_8GLP_045

Geometric discrepancy: 0.0857

The information below is about HL_8GLP_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

11HG|1|28|C|2792
11HG|1|28|G|2793
11HG|1|28|C|2794
11HG|1|28|A|2795
11HG|1|28|G|2796
11HG|1|28|C|2797
11HG|1|28|A|2798
11HG|1|28|G|2799

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 37

60S ribosomal protein L37

Chain 39

60S ribosomal protein L39

Chain L4

60S ribosomal protein L4