HL_11HG_079

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

11HG|1|28|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_079 not in the Motif Atlas

Homologous match to HL_9PN5_048

Geometric discrepancy: 0.0872

The information below is about HL_9PN5_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

11HG|1|28|U|3796
11HG|1|28|C|3797
11HG|1|28|U|3798
11HG|1|28|A|3799
11HG|1|28|A|3800
11HG|1|28|U|3801
11HG|1|28|U|3802
11HG|1|28|A|3803
11HG|1|28|G|3804

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 23

Ribosomal protein L23