HL_11HG_080

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

11HG|1|28|A|3876, 11HG|1|28|A|3877, 11HG|1|28|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_080 not in the Motif Atlas

Homologous match to HL_9PN5_049

Geometric discrepancy: 0.0854

The information below is about HL_9PN5_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

11HG|1|28|G|3873
11HG|1|28|G|3874
11HG|1|28|G|3875
11HG|1|28|A|3876
11HG|1|28|A|3877
11HG|1|28|C|3878
11HG|1|28|G|3879
11HG|1|28|G|3880
11HG|1|28|G|3881
11HG|1|28|C|3882

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L3

60S ribosomal protein L3