HL_9PN5_049

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9PN5|1|A1|A|2372, 9PN5|1|A1|A|2373, 9PN5|1|A1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9PN5|1|A1|G|2369
9PN5|1|A1|G|2370
9PN5|1|A1|G|2371
9PN5|1|A1|A|2372
9PN5|1|A1|A|2373
9PN5|1|A1|C|2374
9PN5|1|A1|G|2375
9PN5|1|A1|G|2376
9PN5|1|A1|G|2377
9PN5|1|A1|C|2378

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AO

Large ribosomal subunit protein uL13A

Chain Ae

60S ribosomal protein L32