HL_11HG_083

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_083 not in the Motif Atlas

Homologous match to HL_8GLP_061

Geometric discrepancy: 0.0925

The information below is about HL_8GLP_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.3

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11HG|1|28|G|4250
11HG|1|28|A|4251
11HG|1|28|C|4252
11HG|1|28|A|4253
11HG|1|28|G|4254
11HG|1|28|A|4255
11HG|1|28|A|4256
11HG|1|28|A|4257
11HG|1|28|C|4258

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 11

60S ribosomal protein L11

Chain CE

Coiled-coil domain-containing protein 124