HL_8GLP_061

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_061 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1464

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8GLP|1|L5|G|4250
8GLP|1|L5|A|4251
8GLP|1|L5|C|4252
8GLP|1|L5|A|4253
8GLP|1|L5|G|4254
8GLP|1|L5|A|4255
8GLP|1|L5|A|4256
8GLP|1|L5|A|4257
8GLP|1|L5|C|4258

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11