HL_11HV_017
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACGUGCGAAU
- Length
- 10 nucleotides
- Bulged bases
- 11HV|1|28|U|1596, 11HV|1|28|A|1600, 11HV|1|28|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11HV_017 not in the Motif Atlas
- Homologous match to HL_8GLP_023
- Geometric discrepancy: 0.0619
- The information below is about HL_8GLP_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.3
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
11HV|1|28|A|1593
11HV|1|28|C|1594
11HV|1|28|G|1595
11HV|1|28|U|1596
11HV|1|28|G|1597
11HV|1|28|C|1598
11HV|1|28|G|1599
11HV|1|28|A|1600
11HV|1|28|A|1601
11HV|1|28|U|1602
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 37
- 60S ribosomal protein L37
- Chain L3
- 60S ribosomal protein L3
Coloring options: